Have you implemented OpenMRS? Please participate in the Implementation Site Survey. If you already have, thank you!
Page tree
Skip to end of metadata
Go to start of metadata

Table of Contents

How to use this guide

Editing this document

This document is a synthesis of multiple pages in the OpenMRS wiki. As a result, it may become outdated and not contain all relevant sub-pages. Edit this page only to change the structure of the document. To edit content, edit the individual pages located elsewhere in the wiki.

Saving as PDF

To save this guide as a PDF, select "Export to PDF" in the Tools menu, located in the upper right of the wiki's display.

Step 1 - Install Firefox

Windows

  1. Download the latest stable release of Firefox and run installation program
  2. Accept the license agreement
  3. Select standard mode for installation or Custom, make sure the application is installed on the default directory. C:\Program Files (x86)\Mozilla Firefox


Debian/Debian derived distributions

Using the package manager as root:

apt install firefox

Step 2 - Install Java

Windows

  1. Download the latest stable release of the Java Runtime Environment (JRE)
  • For the standalone version you will only need the Java Runtime Environment (JRE) not Java Development Kit (JDK)
  • Minimum version required is Java 6 although it is recommended to install Java 7
  • Java 8 is not currently supported (April 7, 2014)
    To download the application use the this link http://www.oracle.com/technetwork/java/javase/downloads/index.html
  • Accept the license agreement and make sure you download the correct file for your windows version, whether its x32 or x64 bit.

Note: If you are unsure about the version please follow this guide from Microsoft
http://windows.microsoft.com/en-US/windows7/find-out-32-or-64-bit

  • It is recommended to download the executable file (.exe) for a simpler run
  • Execute the downloaded file, accept the license agreement and follow the instructions in the wizard, installing in default installation directories.

Ubuntu

You can install the OpenJDK on it's own as a package

sudo apt-get install openjdk-6-jdk

or automatically as a dependency of Tomcat

sudo apt-get install tomcat6

Other Operating Systems

  1. Download the latest stable release of the Java Runtime Environment (JRE)
  2. Run the installer (or unzip the contents, whichever is needed)
  3. Accept the license agreement

Step 3 - Install Tomcat


Windows

  1. Download the latest available version of Tomcat. You can use the .exe version, which installs Tomcat as a service or the .zip archive.  At the time of writing, any version less than Tomcat 7.0 fails to properly launch the OpenMRS application.
    1. Execute the file and install running the default settings o Accept the license agreement
  1. Accept default destination folder
  2. Accept HTTP/1.1 Connector Port 8080
  3. Set Administrator login (username/password)
  4. Accept the Java directory detected
  5. Select Install Tomcat# After installation is complete you will need to change users roles by following this directory on your windows explorer
    1. C:\Program Files\Apache Software Foundation\Tomcat 6.0\conf
    2. Locate the file "tomcat-users.xml" and try to open it.
      1. Most likely your operating system will fail to detect the application that opens the file so make a right-click on the file then select down the menu Open With > Notepad
      2. You will notice that a text editor will show up then locate this character set <tomcat-users> The character set is located on line 18 of the file.
  6. Open the Tomcat users file (e.g. C:\Program Files\Apache Software Foundation\Tomcat 6.0\conf\tomcat-users.xml) in a text editor.
  7. Create a new user called admin with the roles admin, manager and manager-gui. This file should be protected so you will need to open it as Administrator (right-click on your text editor and select "Run as administrator")
<role rolename="tomcat"/>                                                     
<role rolename="admin"/>                                                      
<role rolename="manager"/>                                                    
<role rolename="manager-gui"/>
<user name="admin" password="XXXXXX" roles="tomcat,admin,manager,manager-gui"/>


Then save the file

  1. Your operating system might bring an error message that indicates that you do not have sufficient privileges to save the file. Then it will ask you to save it in a different directory.
    1. You need to save the file in the current directory, right-click on the file "tomcat-users" and click on Properties, at the bottom of the menu.
    2. Navigate to the "Security" tab
    3. Select the username you are currently using on the machine
    4. Click the "Edit" button
    5. Permissions table will allow you to edit your privileges as a user.
    6. Click on Full Control then click OK and then OK again
    7. Now, you should be able to edit and save the file in the same directory.

(Optional) If you've installed Tomcat as a service, you can configure it to start automatically when the computer boots:

  1. Start > Settings > Control Panel > Administrative Tools > Services
  2. Right Click "Apache Tomcat" > Properties > Set "Startup Type" to Automatic
  3. Click Start or restart your pc

Other operating systems

  1. Download the zip archive of Tomcat 6.0.29
  2. Unpack the zip file to a suitable location such as /opt on Linux or /Library on Mac OSX
sudo useradd tomcat6
cd /opt
sudo tar zxvf apache-tomcat-6.0.29.tar.gz
sudo ln -s apache-tomcat-6.0.29 tomcat6
sudo chown tomcat6.tomcat6 apache-tomcat-6.0.29

Open the Tomcat users file (e.g. /opt/tomcat/conf/tomcat-users.xml) in a text editor. Create a new user called admin with the roles admin,manager and manager-gui. This file should be protected so you will need to open it as root (e.g. sudo nano /opt/tomcat/conf/tomcat-users.xml)

<role rolename="tomcat"/>                                                     
<role rolename="admin"/>                                                      
<role rolename="manager"/>                                                    
<role rolename="manager-gui"/>
<user name="admin" password="XXXXXX" roles="tomcat,admin,manager,manager-gui"/>

As a package for Debian, Ubuntu & other Unix systems

  1. Run the following command from a terminal
sudo apt-get install tomcat7

Open the Tomcat users file (e.g. /etc/tomcat7/tomcat-users.xml) in a text editor. Create a new user called admin with the roles admin,manager and manager-gui. This file should be protected so you will need to open it as root (e.g. sudo nano __/etc/tomcat/tomcat-users.xml)

<role rolename="tomcat"/>                                                     
<role rolename="admin"/>                                                      
<role rolename="manager"/>                                                    
<role rolename="manager-gui"/>
<user name="admin" password="XXXXXX" roles="tomcat,admin,manager,manager-gui"/>

Turn off tomcat security flag in /etc/init.d/tomcat7 file: Find "TOMCAT7_SECURITY=yes" and change it to "TOMCAT7_SECURITY=no" For Tomcat 7, it is "no" by default.
Create OpenMRS application data directory and make it writable by Tomcat: (so that the runtime properties file can be written by the webapp during initial startup)

sudo mkdir /usr/share/tomcat7/.OpenMRS
sudo chown -R tomcat7:tomcat7 /usr/share/tomcat7/.OpenMRS/

To know more about the recommended application directory for OpenMRS refer to this discussion on Talk.

To start/stop/restart tomcat7, please type the following commands:

sudo service tomcat7 start
sudo service tomcat7 stop
sudo service tomcat7 restart

Jetty as an alternative to Tomcat

This is meant to run in a Linux environment.

  1. Download the Jetty 7.4.5 tar.gz from here. Don't download 7.5.4; it may not recognize the jdk that you have installed.
  2. Unpack the tar file to your preferred directory (I usually use /usr/share/jetty)
sudo mkdir /usr/share/jetty
cd /usr/share/jetty
sudo mv /pathtojetty/jetty-distribution-(version).tar.gz .
sudo tar xfz jetty-distribution-(verstion).tar.gz
sudo mv jetty-distribution-(version)/* .
sudo rm -rf jetty-distribution-(version)

Now to make it start when you start the system and make Jetty a service

sudo cp bin/jetty.sh /etc/init.d/jetty

Edit /etc/init.d/jetty to include the following two lines after the comments so Jetty knows where your Java and Jetty directories are.

JAVA_HOME=(path to java)
JETTY_HOME=/usr/share/jetty  //or where your jetty installation directory

Jetty is now officially installed and can be run as a service. Now you can run Jetty by using the following command. First put the openmrs.war in to /usr/share/jetty/webapps/ so Jetty will know to run the war.

sudo /etc/init.d/jetty start

Security Enhancements

  • In newest versions of Tomcat(> version 7), by default HttpOnly flag will be set by the server. But in older versions of Tomcat, it needs to set this flag through a configuration. The HttpOnly flag is an additional flag that is used to prevent an XSS (Cross-Site Scripting) exploit from taking access to the session cookie. Because one of the most known ways of subjecting to an XSS attack is access to the session cookie, and to subsequently hijack the victim’s session, the HttpOnly flag is a useful prevention mechanism where a client side script won't be able to access the session cookie from. To add the HttpOnly flag to session cookies in older versions of Tomcat, you need to edit the <TOMCAT_HOME>/conf/context.xml to add useHttpOnly="true" attribute as below:

    <Context useHttpOnly="true">
        <Manager pathname="" />
        <Valve className="org.apache.catalina.valves.CometConnectionManagerValve" />
    </Context>

    https://issues.openmrs.org/browse/TRUNK-3941

 

 

Step 4 - Install MySQL


Windows

  • Download the latest MySQL installer using this link
  • Run the install program (.msi)
  • Accept the license agreement
  • When given the option to update installer please do so
  • Under Feature Selection select Full Installation Setup and select the right Architecture for your computer (32-bit / 64-bit)
  • Click next and you will be shown a list of applications that you need in order to meet the requirements for installing all services. Make sure you satisfy all the requirements, if not, please install the missing applications on your machine.
  • On the next configuration options select “Developer Machine”
  • Leave all other settings to default
  • Enter a username and password. Note: These will be the credentials for the user with root privileges. Do Not Forget the Password
  • Click next and finish the installation.

Note: MySQL might fail to run as a service, for this you can manually start it by navigating to Start > Settings > Control Panel > Administrative Tools > Services
Then find the service called “MySQL”, right click > Properties then you can either click the “start” button or set “Startup Type” to automatic.

Debian/Debian derived distributions

  1. Install the MySQL server package as root:

    sudo apt-get install mysql-server
  2. Enter a root password

Docker

Docker allows easy installation of MySQL in a self-contained container on linux but is a bit more complicated option on Windows or OSX. See https://docs.docker.com/engine/installation/ on how to start using Docker.

After you have installed Docker, it's easy to launch a MySQL container. This will download a MySQL 5.6 Docker image and run it:

$ sudo docker run --name openmrs-mysql56 -p 3306:3306 -e MYSQL_ROOT_PASSWORD=openmrs -d mysql:5.6

Now you can connect to the database on port 3306 with username "root" and password "openmrs". Note that the port mapping argument -p 3306:3306 is needed to expose MySQL service's port inside the container to the host.

You may also ask Docker to list all Docker containers:

$ sudo docker ps --all
CONTAINER ID        IMAGE               COMMAND                  CREATED             STATUS              PORTS                    NAMES
233f1d85e7c9        mysql:5.6           "/entrypoint.sh mysql"   20 seconds ago      Up 19 seconds       0.0.0.0:3306->3306/tcp   openmrs-mysql56

Need to test on another MySQL version? You may run multiple MySQL container's simultaneously just as long as you give them unique names and port mappings. For example to run a MySQL 5.5 container, you might say:

$ sudo docker run --name openmrs-mysql55 -p 3316:3306 -e MYSQL_ROOT_PASSWORD=openmrs -d mysql:5.5

Stopping and starting your database container is easy:

# stopping...
$ sudo docker stop openmrs-mysql56

# ...and starting again
$ sudo docker start openmrs-mysql56

If you decide you don't need the database any more you can remove it:

$ sudo docker rm openmrs-mysql56

Step 5 - Deploy OpenMRS

 

  1. Windows: Ensure that Tomcat is started by checking to see if icon in the tray is green or by using this command on cmd:  wmic.exe process list brief | find /i "tomcat"

  2. Download the latest stable release of OpenMRS.
  3. Navigate to http://localhost:8080/manager/html and enter your Tomcat administrator credentials (username and password chosen when installing Tomcat).
  4. In the Tomcat Web Application Manager, enter the location of the downloaded openmrs.war file. Once done, click on the "upload" button and OpenMRS should start deploying.
    1. The deployment may take some time while the file is being copied to the folder C:\Program Files\Apache Software Foundation\Tomcat <version>\webapps and decompressed.
    2. Note that the OpenMRS.war file is most easily downloaded with Mozilla Firefox. Internet Explorer tries to open the file as a Zip file.
  5. At the end of this process, the web page will refresh and /openmrs should be displayed under Applications. Apache Tomcat should also start the application (Running = True; and in Commands, Stop is underlined)

    Another way to do this is unzipping the .war file directly under webapps folder in Tomcat and then restarting it. You will be able to access http://localhost:8080/openmrs and the installation wizard will show.

 

 

Step 6 - Configuration

Unable to render {include} The included page could not be found.

Step 7 - Start Using OpenMRS

  1. After you have finished configuring OpenMRS, RELOAD the application in Tomcat Manager.
  2. Open http://localhost:8080/openmrs. You will see a login page. If you're using the OpenMRS standalone package, the page is at http://localhost:8080/openmrs-standalone .
    1. You will need to log in initially using the username and password you specified in Step 6 - Configuring OpenMRS, substep 4. If you did not specify a username and password, try the default username admin and password test (both are in lowercase).
    2. Alternatively, while Tomcat is running you can start OpenMRS by entering http://localhost:8080/openmrs/login.htm  (assuming 8080 is your port number for Tomcat; insert the appropriate port number if it is not 8080). For OpenMRS standalone package, you can start OpenMRS by entering http://localhost:8080/openmrs-standalone/login.htm .
  • No labels